PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_170090_gcqt.t1
Common NameSOVF_170090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family AP2
Protein Properties Length: 547aa    MW: 60690.5 Da    PI: 7.5543
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_170090_gcqt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-14287346155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ ++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+ ++ a++k++g
  Sp_170090_gcqt.t1 287 SQYRGVTKHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARSYDLAALKYWG 346
                        78*******************988886678446*************************97 PP

2AP246.11.2e-14391440355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sp_170090_gcqt.t1 391 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 440
                        9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-11287346IPR001471AP2/ERF domain
CDDcd000185.97E-21287355No hitNo description
SuperFamilySSF541711.77E-15287356IPR016177DNA-binding domain
PROSITE profilePS5103218.584288354IPR001471AP2/ERF domain
SMARTSM003804.2E-27288360IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-14288355IPR001471AP2/ERF domain
PRINTSPR003679.7E-7289300IPR001471AP2/ERF domain
CDDcd000189.71E-26389450No hitNo description
SuperFamilySSF541714.32E-18389450IPR016177DNA-binding domain
SMARTSM003803.2E-34390454IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-19390448IPR001471AP2/ERF domain
PROSITE profilePS5103219.335390448IPR001471AP2/ERF domain
PfamPF008476.3E-10391440IPR001471AP2/ERF domain
PRINTSPR003679.7E-7430450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MKRSSENDNS NGSNSSGNSS CSNWLGFSLS PYMKMEGCNS SVDEEEVVHH DYHHHYTHHH  60
QVQPQQQQQQ STVGMFVSHP LPQQQQQQQL NSGPICFENG DGGGENGGYF HTPLTVMPLK  120
SDGSLCLMEA FNRSHPPEEP KLENFLGISL DSIYRQQQQQ QQQLESYISA MSSYQGFSED  180
DLLKNWVTTV DNLSNGGSVS SATALAVVAA SSVSGDLQSL SLSISPGSQS SCATTDNRQI  240
TTTTGSGNDN CVGVVAMDTK KRGFGKIVQN KHTVHRKSID TFGQRTSQYR GVTKHRWTGR  300
YEAHLWDNSC KKEGQTRKGR QVYLGGYDME EKAARSYDLA ALKYWGLSTH TNFPIENYKQ  360
EIQDMKNMTR QEFVAHLRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  420
FSTQEEAAEA YDVAAIKFRG TNAVTNFDIS RYHVEKIMSS NALLAGEQAR RNNKVELIEE  480
CPSSTENKRN ASSTGEWKMV PSFSLSPTQN MGSAAHFSSA SSLVTSLNSS REGSPDENMX  540
SAATHHN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687600.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X1
SwissprotQ389141e-154ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A0K9QK700.0A0A0K9QK70_SPIOL; Uncharacterized protein
STRINGPGSC0003DMT4000125881e-177(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-131AP2 family protein